Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Description: Find some Debian packaged software under their original names
--- proteinortho.orig/proteinortho6.pl
+++ proteinortho/proteinortho6.pl
@@ -535,6 +535,9 @@
   $NC="";
 }
 
+# Find some Debian packaged software under their original names
+$ENV{PATH} = "$ENV{PATH}:/usr/lib/debian-med/bin";
+
 ##########################################################################################
 # Parameters
 ##########################################################################################
--- proteinortho.orig/Makefile
+++ proteinortho/Makefile
@@ -265,7 +265,7 @@
 	fi
 
 	@echo -n " [3/12] -p=diamond test: "
-	@if [ "$(shell which diamond)" = "" ]; then\
+	@if [ "$(shell which diamond-aligner)" = "" ]; then\
 		echo "$(ORANGE)diamond missing, skipping...$(NC)"; \
 	else \
 		./proteinortho6.pl -silent -force -project=test_diamond -p=diamond test/*.faa; \
