#!/usr/bin/env python
# -*- coding: utf-8 -*-
# Copyright (c) 2014 Mikkel Schubert <MikkelSch@gmail.com>
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
# copies of the Software, and to permit persons to whom the Software is
# furnished to do so, subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in
# all copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
# SOFTWARE.
"""
Legacy script for invoking the PALEOMIX command "rmdup_collapsed"; main scripts
are otherwise created by setuptools during the installation.
"""
import sys

try:
    import paleomix
except ImportError:
    error = sys.exc_info()[1]  # Python 2/3 compatible exception syntax
    sys.stderr.write("""Error importing required PALEOMIX module 'paleomix':
    - %s

Please make sure that PYTHONPATH points to the location of the 'paleomix'
module. This may be done permanently by appendign the following to your
~/.bashrc file (if using Bash):
    export PYTHONPATH=${PYTHONPATH}:/path/to/paleomix/checkout/...
""" % (error,))
    sys.exit(1)

if __name__ == '__main__':
    sys.exit(paleomix.run_rmdup_collapsed())
