biology/stacks - The NetBSD Packages Collection

Software pipeline for building loci from short-read sequences 

Stacks is a software pipeline for building loci from short-read sequences, such
as those generated on the Illumina platform. Stacks was developed to work with
restriction enzyme-based data, such as RAD-seq, for the purpose of building
genetic maps and conducting population genomics and phylogeography.

Build dependencies

pkgtools/mktools shells/bash pkgtools/cwrappers

Runtime dependencies

lang/perl5 math/R lang/python312 lang/python312 math/R

Binary packages

OSArchitectureVersion
NetBSD 10.0aarch64stacks-2.60nb3.tgz
NetBSD 10.0aarch64stacks-2.60nb3.tgz
NetBSD 10.0aarch64ebstacks-2.60nb3.tgz
NetBSD 10.0aarch64ebstacks-2.60nb3.tgz
NetBSD 10.0earmv7hfstacks-2.60nb3.tgz
NetBSD 10.0earmv7hfstacks-2.60nb3.tgz
NetBSD 10.0earmv7hfstacks-2.60nb3.tgz
NetBSD 10.0i386stacks-2.60nb3.tgz
NetBSD 10.0i386stacks-2.60nb3.tgz
NetBSD 10.0i386stacks-2.60nb3.tgz
NetBSD 10.0powerpcstacks-2.60nb3.tgz
NetBSD 10.0powerpcstacks-2.60nb3.tgz
NetBSD 10.0powerpcstacks-2.60nb3.tgz
NetBSD 10.0powerpcstacks-2.60nb3.tgz
NetBSD 10.0sparc64stacks-2.60nb3.tgz
NetBSD 10.0sparc64stacks-2.60nb3.tgz
NetBSD 10.0x86_64stacks-2.60nb3.tgz
NetBSD 10.0x86_64stacks-2.60nb3.tgz
NetBSD 10.0x86_64stacks-2.60nb3.tgz
NetBSD 9.0aarch64stacks-2.60nb3.tgz
NetBSD 9.0aarch64stacks-2.60nb3.tgz
NetBSD 9.0aarch64stacks-2.60nb3.tgz
NetBSD 9.0alphastacks-2.60nb3.tgz
NetBSD 9.0alphastacks-2.60nb3.tgz
NetBSD 9.0earmv7hfstacks-2.60nb3.tgz
NetBSD 9.0earmv7hfstacks-2.60nb3.tgz
NetBSD 9.0earmv7hfstacks-2.60nb3.tgz
NetBSD 9.0i386stacks-2.60nb3.tgz
NetBSD 9.0i386stacks-2.60nb3.tgz
NetBSD 9.0i386stacks-2.60nb3.tgz
NetBSD 9.0powerpcstacks-2.60nb3.tgz
NetBSD 9.0powerpcstacks-2.60nb3.tgz
NetBSD 9.0powerpcstacks-2.60nb3.tgz
NetBSD 9.0x86_64stacks-2.60nb3.tgz
NetBSD 9.0x86_64stacks-2.60nb3.tgz
NetBSD 9.0x86_64stacks-2.60nb3.tgz
NetBSD 9.3x86_64stacks-2.60nb3.tgz
NetBSD 9.3x86_64stacks-2.60nb3.tgz

Binary packages can be installed with the high-level tool pkgin (which can be installed with pkg_add) or pkg_add(1) (installed by default). The NetBSD packages collection is also designed to permit easy installation from source.

Available build options

(none)

Known vulnerabilities

The pkg_admin audit command locates any installed package which has been mentioned in security advisories as having vulnerabilities.

Please note the vulnerabilities database might not be fully accurate, and not every bug is exploitable with every configuration.

Problem reports, updates or suggestions for this package should be reported with send-pr.